PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016461657.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 101aa    MW: 11597.4 Da    PI: 6.9545
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016461657.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.85.1e-081752340
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                      W++e+   +++a +++G++ W+++a+ +   Rt++++
   XP_016461657.1 17 HWSEEDLTHFYQAYRKYGKD-WEKVAAAVK-PRTAEMV 52
                     5*****************99.********9.8999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.14E-111162IPR009057Homeodomain-like
SMARTSM007177.1E-41462IPR001005SANT/Myb domain
PfamPF002493.8E-71753IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-51758IPR009057Homeodomain-like
CDDcd001673.38E-61852No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MKNSLRKRKA SDMIGPHWSE EDLTHFYQAY RKYGKDWEKV AAAVKPRTAE MVEALYIMHM  60
AYLSLPEGTA SAVGLIALIS DHYCYLDAVV SELRRIIDDV F
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009608711.11e-70PREDICTED: protein ALWAYS EARLY 3-like isoform X4
RefseqXP_009608712.11e-70PREDICTED: protein ALWAYS EARLY 3-like isoform X4
RefseqXP_016461656.11e-70PREDICTED: protein ALWAYS EARLY 3-like isoform X4
RefseqXP_016461657.11e-70PREDICTED: protein ALWAYS EARLY 3-like isoform X4
SwissprotQ6A3321e-33ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBLK4DHJ02e-42K4DHJ0_SOLLC; Uncharacterized protein
STRINGSolyc12g098160.1.17e-42(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.27e-35DNA binding